miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|238458917|gb|GR191787.1|GR191787 CTTTTCACAGATTTAGAGCTTTTATTCATTCTTTCAGAGTTCTCCAGATTCACATTCTTCCAAAGATGAAAGACAAATTC
TCATGCACCATTCTCCAGAGCGAAGCCCTCACTAAGTACCTACTGGAAACAAGTGCGTACCCAAGAGAGCATGAACAACT
CAAGGAACTCAGGAACGCCAGTGCTGAGAAATACCAACAGCTGAGTGCGATGAACGTGCCGGCGGACGAAGGGCAATTCA
TATCACTGCTGCTGAAAGTGATGAACGCAAAGAAAACAATTGAAGTTGGTGTTTTCACTGGCTACTCTCTTTTGGTCACT
GCTCTTGCTCTTCCTCATGATGCCAAAGTAGTTGCGATTGATCCAGACAGAGAAGCATACGAGACAGGGTTGCCATTCAT
AGAGAAGGCAGGTGTTGCACATAAGATACAGTTCATTGATTCAGATGCCATGACTGCTATGAACGAGTTCCTTGATAATG
GAGAAGAAGAGACATTTGATTTTGCATTTGTGGACGCGGACAAAGAGAACTACGTGAACTACCACGAGCAGCTGCTGAAG
CTGGTGAGGGTTGGAGGAATTATAGCCTACGACAACACCCTGTGGTCCGGCACTGTGGCATTGGTTGACGACGAGCTGAG
TCAGGAGTGGAAGGATCGCATAGGGGTAAATCGGGTATTTCTCAGGGATCTGAACAGTTTCTTGGCCGCCGATTCTCGCA
TTGAGTTGGCTCATCTCTCCATCGGTGATGGACTCACTCTCTGCAGGCGC




Most similar to sp|P93711|CAMT_POPKI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P93711|CAMT_POPKI Caffeoyl-CoA O-methyltransferase OS=Populus
           kitakamiensis PE=2 SV=1
          Length = 235

 Score =  282 bits (722), Expect = 2e-75
 Identities = 144/228 (63%), Positives = 178/228 (78%), Gaps = 1/228 (0%)
 Frame = +3

Query: 90  ILQSEALTKYLLETSAYPREHEQLKELRNASAEKYQQLSAMNVPADEGQFISLLLKVMNA 269
           ILQSEAL +Y+ ETSAYP EHEQLKELR A+ +KY  LS M+VP DEG+F+S+LLK+MNA
Sbjct: 10  ILQSEALKQYIYETSAYPGEHEQLKELREATTKKYGSLSGMSVPVDEGRFLSMLLKLMNA 69

Query: 270 KKTIEVGVFTGYSLLVTALALPHDAKVVAIDPDREAYETGLPFIEKAGVAHKIQFIDSDA 449
           K+T+EVGVFTGYSLL TALALP D +V AID DR AYE GLPFI+KAGV  KI FI S+A
Sbjct: 70  KRTLEVGVFTGYSLLSTALALPEDGQVTAIDKDRGAYEIGLPFIQKAGVEDKINFIQSEA 129

Query: 450 MTAMNEFLDNGEEETFDFAFVDADKENYVNYHEQLLKLVRVGGIIAYDNTLWSGTVAL-V 626
              +NE L N ++  FDFAFVDADK +Y +YHEQLLKLV++GGIIAYDNTLW G VA  V
Sbjct: 130 PPILNEMLCNDKQPEFDFAFVDADKSSYKHYHEQLLKLVKIGGIIAYDNTLWYGLVAKEV 189

Query: 627 DDELSQEWKDRIGVNRVFLRDLNSFLAADSRIELAHLSIGDGLTLCRR 770
           DDE+ +     + + R  + + N  L++D R+E++ +SIGDG+TLCRR
Sbjct: 190 DDEVPEP----LRMVRTVIMEFNKLLSSDLRVEISQISIGDGVTLCRR 233